Spades-day2-pc.rar May 2026

Running the spades.py command on the cleaned "Day 2" datasets.

Always prioritize scaffolds.fasta for your "Day 2" analysis. Scaffolds use paired-end read information to bridge gaps between contigs, providing a more complete picture of the genome. Common Workshop Workflow for Day 2 SPADES-Day2-pc.rar

Without it, your final sequence might have small errors that make downstream analysis (like finding genes) more difficult. Running the spades